Pesquisa | Portal de Pesquisa da BVS

1.

Long non-coding RNAs: definitions, functions, challenges and recommendations.

Mattick, John S; Amaral, Paulo P; Carninci, Piero; Carpenter, Susan; Chang, Howard Y; Chen, Ling-Ling; Chen, Runsheng; Dean, Caroline; Dinger, Marcel E; Fitzgerald, Katherine A; Gingeras, Thomas R; Guttman, Mitchell; Hirose, Tetsuro; Huarte, Maite; Johnson, Rory; Kanduri, Chandrasekhar; Kapranov, Philipp; Lawrence, Jeanne B; Lee, Jeannie T; Mendell, Joshua T; Mercer, Timothy R; Moore, Kathryn J; Nakagawa, Shinichi; Rinn, John L; Spector, David L; Ulitsky, Igor; Wan, Yue; Wilusz, Jeremy E; Wu, Mian.

Nat Rev Mol Cell Biol ; 24(6): 430-447, 2023 06.

Artigo em Inglês | MEDLINE | ID: mdl-36596869

2.

RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure.

Lu, Zhipeng; Zhang, Qiangfeng Cliff; Lee, Byron; Flynn, Ryan A; Smith, Martin A; Robinson, James T; Davidovich, Chen; Gooding, Anne R; Goodrich, Karen J; Mattick, John S; Mesirov, Jill P; Cech, Thomas R; Chang, Howard Y.

Cell ; 165(5): 1267-1279, 2016 May 19.

Artigo em Inglês | MEDLINE | ID: mdl-27180905

3.

Natural antisense transcripts as versatile regulators of gene expression.

Werner, Andreas; Kanhere, Aditi; Wahlestedt, Claes; Mattick, John S.

Nat Rev Genet ; 2024 Apr 17.

Artigo em Inglês | MEDLINE | ID: mdl-38632496

4.

Charting the unknown epitranscriptome.

Novoa, Eva Maria; Mason, Christopher E; Mattick, John S.

Nat Rev Mol Cell Biol ; 18(6): 339-340, 2017 06.

Artigo em Inglês | MEDLINE | ID: mdl-28488699

5.

The retroelement Lx9 puts a brake on the immune response to virus infection.

Bartonicek, Nenad; Rouet, Romain; Warren, Joanna; Loetsch, Claudia; Rodriguez, Gabriela Santos; Walters, Stacey; Lin, Francis; Zahra, David; Blackburn, James; Hammond, Jillian M; Reis, Andre L M; Deveson, Ira W; Zammit, Nathan; Zeraati, Mahdi; Grey, Shane; Christ, Daniel; Mattick, John S; Chtanova, Tatyana; Brink, Robert; Dinger, Marcel E; Weatheritt, Robert J; Sprent, Jonathan; King, Cecile.

Nature ; 608(7924): 757-765, 2022 08.

Artigo em Inglês | MEDLINE | ID: mdl-35948641

6.

RNA out of the mist.

Mattick, John S.

Trends Genet ; 39(3): 187-207, 2023 03.

Artigo em Inglês | MEDLINE | ID: mdl-36528415

7.

Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing.

Begik, Oguzhan; Diensthuber, Gregor; Liu, Huanle; Delgado-Tejedor, Anna; Kontur, Cassandra; Niazi, Adnan Muhammad; Valen, Eivind; Giraldez, Antonio J; Beaudoin, Jean-Denis; Mattick, John S; Novoa, Eva Maria.

Nat Methods ; 20(1): 75-85, 2023 01.

Artigo em Inglês | MEDLINE | ID: mdl-36536091

8.

The human mitochondrial transcriptome.

Mercer, Tim R; Neph, Shane; Dinger, Marcel E; Crawford, Joanna; Smith, Martin A; Shearwood, Anne-Marie J; Haugen, Eric; Bracken, Cameron P; Rackham, Oliver; Stamatoyannopoulos, John A; Filipovska, Aleksandra; Mattick, John S.

Cell ; 146(4): 645-58, 2011 Aug 19.

Artigo em Inglês | MEDLINE | ID: mdl-21854988

9.

A Kuhnian revolution in molecular biology: Most genes in complex organisms express regulatory RNAs.

Mattick, John S.

Bioessays ; 45(9): e2300080, 2023 09.

Artigo em Inglês | MEDLINE | ID: mdl-37318305

10.

Widespread formation of double-stranded RNAs in testis.

Werner, Andreas; Clark, James E; Samaranayake, Calum; Casement, John; Zinad, Hany S; Sadeq, Shaymaa; Al-Hashimi, Surar; Smith, Martin; Kotaja, Noora; Mattick, John S.

Genome Res ; 31(7): 1174-1186, 2021 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-34158368

11.

Exploring the epitranscriptome by native RNA sequencing.

Begik, Oguzhan; Mattick, John S; Novoa, Eva Maria.

RNA ; 28(11): 1430-1439, 2022 11.

Artigo em Inglês | MEDLINE | ID: mdl-36104106

12.

Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.

Pineda, Sandy S; Chin, Yanni K-Y; Undheim, Eivind A B; Senff, Sebastian; Mobli, Mehdi; Dauly, Claire; Escoubas, Pierre; Nicholson, Graham M; Kaas, Quentin; Guo, Shaodong; Herzig, Volker; Mattick, John S; King, Glenn F.

Proc Natl Acad Sci U S A ; 117(21): 11399-11408, 2020 05 26.

Artigo em Inglês | MEDLINE | ID: mdl-32398368

13.

RNA Regulatory Networks 2.0.

Enguita, Francisco J; Leitão, Ana Lúcia; Mattick, John S.

Int J Mol Sci ; 24(10)2023 May 19.

Artigo em Inglês | MEDLINE | ID: mdl-37240347

14.

Extracellular vesicles from neural stem cells transfer IFN-Î³ via Ifngr1 to activate Stat1 signaling in target cells.

Cossetti, Chiara; Iraci, Nunzio; Mercer, Tim R; Leonardi, Tommaso; Alpi, Emanuele; Drago, Denise; Alfaro-Cervello, Clara; Saini, Harpreet K; Davis, Matthew P; Schaeffer, Julia; Vega, Beatriz; Stefanini, Matilde; Zhao, CongJian; Muller, Werner; Garcia-Verdugo, Jose Manuel; Mathivanan, Suresh; Bachi, Angela; Enright, Anton J; Mattick, John S; Pluchino, Stefano.

Mol Cell ; 56(2): 193-204, 2014 Oct 23.

Artigo em Inglês | MEDLINE | ID: mdl-25242146

15.

Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation.

Jonkhout, Nicky; Cruciani, Sonia; Santos Vieira, Helaine Graziele; Tran, Julia; Liu, Huanle; Liu, Ganqiang; Pickford, Russell; Kaczorowski, Dominik; Franco, Gloria R; Vauti, Franz; Camacho, Noelia; Abedini, Seyedeh Sedigheh; Najmabadi, Hossein; Ribas de Pouplana, Lluís; Christ, Daniel; Schonrock, Nicole; Mattick, John S; Novoa, Eva Maria.

RNA Biol ; 18(11): 1905-1919, 2021 11.

Artigo em Inglês | MEDLINE | ID: mdl-33499731

16.

Impacts of genomics on the health and social costs of intellectual disability.

Doble, Brett; Schofield, Deborah; Evans, Carey-Anne; Groza, Tudor; Mattick, John S; Field, Mike; Roscioli, Tony.

J Med Genet ; 57(7): 479-486, 2020 07.

Artigo em Inglês | MEDLINE | ID: mdl-31980565

17.

CNS cell type-specific gene profiling of P301S tau transgenic mice identifies genes dysregulated by progressive tau accumulation.

Ke, Yazi D; Chan, Gabriella; Stefanoska, Kristie; Au, Carol; Bi, Mian; Müller, Julius; Przybyla, Magdalena; Feiten, Astrid; Prikas, Emmanuel; Halliday, Glenda M; Piguet, Olivier; Kiernan, Matthew C; Kassiou, Michael; Hodges, John R; Loy, Clement T; Mattick, John S; Ittner, Arne; Kril, Jillian J; Sutherland, Greg T; Ittner, Lars M.

J Biol Chem ; 294(38): 14149-14162, 2019 09 20.

Artigo em Inglês | MEDLINE | ID: mdl-31366728

18.

The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome.

Deveson, Ira W; Hardwick, Simon A; Mercer, Tim R; Mattick, John S.

Trends Genet ; 33(7): 464-478, 2017 07.

Artigo em Inglês | MEDLINE | ID: mdl-28535931

19.

The rise of regulatory RNA.

Morris, Kevin V; Mattick, John S.

Nat Rev Genet ; 15(6): 423-37, 2014 Jun.

Artigo em Inglês | MEDLINE | ID: mdl-24776770

20.

Improved definition of the mouse transcriptome via targeted RNA sequencing.

Bussotti, Giovanni; Leonardi, Tommaso; Clark, Michael B; Mercer, Tim R; Crawford, Joanna; Malquori, Lorenzo; Notredame, Cedric; Dinger, Marcel E; Mattick, John S; Enright, Anton J.

Genome Res ; 26(5): 705-16, 2016 05.

Artigo em Inglês | MEDLINE | ID: mdl-27197243

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